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A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

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dc.citationChapman, J. A., Mascher, M., Buluç, A., Barry, K., Georganas, E., Session, A., . . . Rokhsar, D. S. (2015). A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biology, 16(1). https://doi.org/10.1186/s13059-015-0582-8
dc.citation.doi10.1186/s13059-015-0582-8
dc.citation.issn1474-7596
dc.citation.issn1474-760X
dc.citation.issue1
dc.citation.jtitleGenome Biology
dc.citation.spage17
dc.citation.volume16
dc.contributor.authorChapman, J. A.
dc.contributor.authorMascher, M.
dc.contributor.authorBuluç, A.
dc.contributor.authorBarry, K.
dc.contributor.authorGeorganas, E.
dc.contributor.authorSession, A.
dc.contributor.authorStrnadova, V.
dc.contributor.authorJenkins, J.
dc.contributor.authorSehgal, Sunish K.
dc.contributor.authorOliker, L.
dc.contributor.authorSchmutz, J.
dc.contributor.authorYelick, K. A.
dc.contributor.authorScholz, U.
dc.contributor.authorWaugh, R.
dc.contributor.authorPoland, Jesse A.
dc.contributor.authoreidjpoland
dc.date.accessioned2016-04-06T15:14:27Z
dc.date.available2016-04-06T15:14:27Z
dc.date.issued2015-01-31
dc.date.published2015
dc.descriptionCitation: Chapman, J. A., Mascher, M., Buluç, A., Barry, K., Georganas, E., Session, A., . . . Rokhsar, D. S. (2015). A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biology, 16(1). doi:10.1186/s13059-015-0582-8
dc.descriptionPolyploid species have long been thought to be recalcitrant to whole-genome assembly. By combining high-throughput sequencing, recent developments in parallel computing, and genetic mapping, we derive, de novo, a sequence assembly representing 9.1 Gbp of the highly repetitive 16 Gbp genome of hexaploid wheat, Triticum aestivum, and assign 7.1 Gb of this assembly to chromosomal locations. The genome representation and accuracy of our assembly is comparable or even exceeds that of a chromosome-by-chromosome shotgun assembly. Our assembly and mapping strategy uses only short read sequencing technology and is applicable to any species where it is possible to construct a mapping population. © 2015 Chapman et al. licensee BioMed Central.
dc.descriptionAdditional Authors: Muehlbauer, G. J.;Stein, N.;Rokhsar, D. S.
dc.description.versionArticle: Version of Record
dc.identifier.urihttp://hdl.handle.net/2097/32468
dc.relation.urihttps://doi.org/10.1186/s13059-015-0582-8
dc.rights© 2015 Chapman et al.; licensee BioMed Central. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.rights.urihttps://www.biomedcentral.com/about/policies/reprints-and-permissions
dc.subjectAccuracy
dc.subjectArticle
dc.subjectChromatin Assembly And Disassembly
dc.subjectChromosomal Localization
dc.subjectGene Mapping
dc.subjectHexaploidy
dc.titleA whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
dc.typeText

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